Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015827981.1_cds_XP_016503268.1_16827
CDS Infomation

[gene=LOC107821348] [db_xref=GeneID:107821348] [protein=FHA domain-containing protein PS1-like] [protein_id=XP_016503268.1] [location=complement(join(10534..10785,10889..11271,11387..11522,11841..13031,13282..13490,14110..14416))] [gbkey=CDS]
Sequence

ATGGCAGAGAATCAAGAATCTTTGGGAAAACCCAATTTACAGACTGAATTAGAGAAGAAG
ATTCCAGTGTTTACAGTGCTAAAGAATGGAGCCATCCTCAAGAACATCTTTCTTCTTGAT
AATCCCCCACCTATAACCACAACTTCTATTGAAGAAACGAAACCAGATTTTGAAGAGATT
TTGTTGGTGGTTGGAAGACACCCAGATTGTAACATAGTCTTGGAACACCCAAGCATCAGC
AGATTCCACCTCCGCATTCACTCGAATCCCTCTACTCACTCCCTCTCTCTTATTGATCTG
TCTTCTGTCCATGGGACATGGATTTCTGGCAACAAGATTGAACCAGGGGTTAGAGTAGAT
TTGAAAGAGGGCGATAAGATGCAGCTTGGAGGTTCAAGCAGGGAGTACAGGCTTCATTGG
ATTCCAATCAGCCGTGCATATGATTTGGGGAATCCATTTGTAGCTCCATTAAGTGAAGCA
GAATCAGTGAAAGAAGCAGAGGAGAAAAAACATCAGGATGAGAGTGGCATTGCCCTTCAG
AATGAGGATGATGATTCAGTGCAGGTTCTAGATTCAGCATTTTCTGATATGAATTTATTG
CCATATGTAAAAAGTTTGACTCCATCAGCTCCTCCAATGCCTGAATATTTGGAGTCTTCA
TTTCCTGTTGGCGACGAGGCAGTAAATGTAAATCCACCTGAGAAAATACATGGAGAGAGT
GAAATCAGTTTGATACAGCCTGCTTATGAACCTGACAAAGAAAACAGCACTCCGCGAGCG
CTTCTTGTCTCAGGAGGGTCCCAAACAGAAAATGCACATAGTCCAGTAAGATCTCAGCAA
AAATGTTTGAGCATTTGGTCTAGAAGGGGAAAATGTTCCAGTGTTCAGATTCAAACAGGT
AGAGATAGAGCAATTATTGAAAAAGTTGACATTGATACTGAAGTTAACTCACTTAATCGT
GAGAAGGTTGGAATGGGATCAGTTTCGAATGATCTTTTTTCTAGTGCAAACAAGGACGAA
GAAGATGCATTCACTCCAGACAAAGAGAACCATACTCCTAGTTCTCTCTTCCTTGGGTCC
GAGATGAATGAACAAACTACCAAACCTGTACTTTCTTGTTGTACGGATGAGAATGCTGAA
GAAAGTTTTAATCTGGACAGAATGAATCTTACCCCAAACGCTCATTTGCTGCAATCAATG
AAGAAGACGAGCAGTTTGGAACAAAATAAGCATCGAAAACCTTTTAGATCCTCCCATATG
AAAGATATTTTTGATCCCACATTCCATGAAGCTGAAGGTCTTAAATACCACAAGAAAGAG
AATGTCGGATCATCTACAGTGCTCTCAAATATTTGTTGTAATAGTGAAGAAATTTTCACT
CCAGATAAAGAGAATATGATACCCAATAGTTGTTCAATGAGATCGAAAAGGAAGGGGAAA
ATGGTGGAAGTTAAGCATCTAAAACCATTTGAGAAAGAAAACTTGACTGGCAAAGTACTT
GAAGAGCAGAAATCAGCAAGTGTTGCTTCCAGAAATATGGATAGATCGGAGGTAAATATA
CTGAAGGACAAAACAGATAGAGTGCCATTTCAATCTCTGCTTGTGAACTCCCCCAGCAAC
ACCAATTCAGAATCTCCAGAACGGAAAATCAAGCTGAATGCGAATCCAATCAAGTGTCAA
CAAATTATGGAAGCAGGCCCCTTTTCTGATAACAATGCCAGGGAAGAGAAAAGAAGGTGG
ACCACGGTAGTGGACACCACTGCTTTGTTAAACAAAGAGTCAAGAAAAGCTTTGCAGCTT
TTGCAAGGTCTCAAGGGGACTTACCTGATAATCCCCAGAATTGTATTAAGGGAACTGGAT
TGCATGAAGAGGCGTGCTAGCTTTTTTAGAAAAGCAACAGAGGTATCTGCAGCATTAGAA
TGGATAGAAGACTGCCTGGTAAATGCAAAATCATGGGTTCATGTGCAGAGTTGTGTGGAG
GAAGCAAGGCCAATGGCACCGACTCCTCCTGCTACTGCACCACCGTCTTTGTTCAGTAAG
GAGAATGGCATCTTTCCAGTTGGCTCGGTTCTATCCTCGCCATATTATGGTCTAGCGGAA
ATTGTTTCACCCACAGCAGAAGATCATATCCTTGAATGTGCCCTCCTCCTTAAAAGAACT
AACAGAGATGGACAACTAGTTCTCCTTAGCAATGATCGTACCATGAAGATCAAGGCCATG
GCAGAAGGGTTAAACTGTGAGACAGCAGAGGATTTCCGAGAGAGTCTGGTGAATCCATTC
TCAGAGAGGTTTCTTTGGAAAGAAAGTTCTCCCAGAGGAAGCACTTGGTCGTGTGTGGAT
GACTTTGTTCTTGGGGAGCCATACTACCCTGGTCCTCTAAAGAAGTCATCAAAGTCAGGA
CAAGCAGCAAAAGGCTTGAAGCTGATATTGCTTCATAATTCTCATTATAGGCAAATCTGT
TCAGGCAGTGGCAGTTAG

Peptide Sequence

PEP ID

XP_016503268.1
PEP Infomation

PREDICTED: FHA domain-containing protein PS1-like [Nicotiana tabacum]
Sequence

MAENQESLGKPNLQTELEKKIPVFTVLKNGAILKNIFLLDNPPPITTTSIEETKPDFEEI
LLVVGRHPDCNIVLEHPSISRFHLRIHSNPSTHSLSLIDLSSVHGTWISGNKIEPGVRVD
LKEGDKMQLGGSSREYRLHWIPISRAYDLGNPFVAPLSEAESVKEAEEKKHQDESGIALQ
NEDDDSVQVLDSAFSDMNLLPYVKSLTPSAPPMPEYLESSFPVGDEAVNVNPPEKIHGES
EISLIQPAYEPDKENSTPRALLVSGGSQTENAHSPVRSQQKCLSIWSRRGKCSSVQIQTG
RDRAIIEKVDIDTEVNSLNREKVGMGSVSNDLFSSANKDEEDAFTPDKENHTPSSLFLGS
EMNEQTTKPVLSCCTDENAEESFNLDRMNLTPNAHLLQSMKKTSSLEQNKHRKPFRSSHM
KDIFDPTFHEAEGLKYHKKENVGSSTVLSNICCNSEEIFTPDKENMIPNSCSMRSKRKGK
MVEVKHLKPFEKENLTGKVLEEQKSASVASRNMDRSEVNILKDKTDRVPFQSLLVNSPSN
TNSESPERKIKLNANPIKCQQIMEAGPFSDNNAREEKRRWTTVVDTTALLNKESRKALQL
LQGLKGTYLIIPRIVLRELDCMKRRASFFRKATEVSAALEWIEDCLVNAKSWVHVQSCVE
EARPMAPTPPATAPPSLFSKENGIFPVGSVLSSPYYGLAEIVSPTAEDHILECALLLKRT
NRDGQLVLLSNDRTMKIKAMAEGLNCETAEDFRESLVNPFSERFLWKESSPRGSTWSCVD
DFVLGEPYYPGPLKKSSKSGQAAKGLKLILLHNSHYRQICSGSGS

Transcript Sequence

Gene sequence data has not been registered.